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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC035626.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | bHLH | ||||||||
Protein Properties | Length: 613aa MW: 68676.8 Da PI: 4.4678 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.3 | 1.3e-13 | 374 | 417 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ErrRR+++N+++ +Lr+l+Pk + Kl+ a+iL A+eYI +Lq EcC035626.20 374 QAERRRRKKLNDRLYNLRSLVPKiS------KLDRASILGDAIEYIMELQ 417 68*********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.1E-19 | 72 | 218 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 6.54E-17 | 366 | 430 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.145 | 367 | 416 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-15 | 373 | 422 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-11 | 374 | 417 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-16 | 374 | 430 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.90E-13 | 375 | 419 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048657 | Biological Process | anther wall tapetum cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 613 aa Download sequence Send to blast |
MVTCVNPSSD SCRVVETRVA SIIFQDGSKG LPSSLVLALV GVSGVEDCCL GNLNLALIEF 60 LVKMFIAQTP MERLRPLVGL NGWDFCVLWK LSEDQRLIEW IDCCCAGAEH NEIGNEEFDF 120 PVSPCRDVMF QHPRRTKACE LLAQMPSSVP LESGIYAHAF MSYQPKWLNF ASISDSKAEE 180 GTIGTKVLVP FTGGLVELFV TKQVPEDQQI IGFITSQFSI PFEADSLSSV CMETNFSIIP 240 NALNDLQSRP QMIDPNDHTN SPAQLPENLN LHDVSSDRIH QYEVTIGGSY DTFVANEEMN 300 PSNKLSAMDG FQEMDGAEQM NMDLTEQVNT EWQGNDEETV KPENGATKST SDCSDQNEDD 360 DERNGKQPHS KNLQAERRRR KKLNDRLYNL RSLVPKISKL DRASILGDAI EYIMELQKQA 420 KELQDELEEQ SDVEDPRNSG SGSNFTVGQP EFFDIGLLSA SEKVAFTYQL PGNTQGDGST 480 RRNRESETAY DKQQRMEPQV EVRQMDENEF FIKVFGEHRP GGFVRLMEAL DSIGLEVTNA 540 NVTRFLSLVS NVFTVEKKDS ELVEADLLKD SLLELTRNPT SGWPGLSKAA ETGGARNYHG 600 HQHHYHLLHN HLF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 375 | 382 | ERRRRKKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010068596.1 | 0.0 | PREDICTED: transcription factor ABORTED MICROSPORES | ||||
TrEMBL | A0A059BEM0 | 0.0 | A0A059BEM0_EUCGR; Uncharacterized protein | ||||
STRING | POPTR_0009s13860.1 | 1e-163 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7589 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 1e-134 | bHLH family protein |