PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC035626.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 613aa    MW: 68676.8 Da    PI: 4.4678
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC035626.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.3e-13374417755
                   HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   ++ErrRR+++N+++ +Lr+l+Pk +      Kl+ a+iL  A+eYI +Lq
  EcC035626.20 374 QAERRRRKKLNDRLYNLRSLVPKiS------KLDRASILGDAIEYIMELQ 417
                   68*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-1972218IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474596.54E-17366430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.145367416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-15373422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-11374417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-16374430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.90E-13375419No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MVTCVNPSSD SCRVVETRVA SIIFQDGSKG LPSSLVLALV GVSGVEDCCL GNLNLALIEF  60
LVKMFIAQTP MERLRPLVGL NGWDFCVLWK LSEDQRLIEW IDCCCAGAEH NEIGNEEFDF  120
PVSPCRDVMF QHPRRTKACE LLAQMPSSVP LESGIYAHAF MSYQPKWLNF ASISDSKAEE  180
GTIGTKVLVP FTGGLVELFV TKQVPEDQQI IGFITSQFSI PFEADSLSSV CMETNFSIIP  240
NALNDLQSRP QMIDPNDHTN SPAQLPENLN LHDVSSDRIH QYEVTIGGSY DTFVANEEMN  300
PSNKLSAMDG FQEMDGAEQM NMDLTEQVNT EWQGNDEETV KPENGATKST SDCSDQNEDD  360
DERNGKQPHS KNLQAERRRR KKLNDRLYNL RSLVPKISKL DRASILGDAI EYIMELQKQA  420
KELQDELEEQ SDVEDPRNSG SGSNFTVGQP EFFDIGLLSA SEKVAFTYQL PGNTQGDGST  480
RRNRESETAY DKQQRMEPQV EVRQMDENEF FIKVFGEHRP GGFVRLMEAL DSIGLEVTNA  540
NVTRFLSLVS NVFTVEKKDS ELVEADLLKD SLLELTRNPT SGWPGLSKAA ETGGARNYHG  600
HQHHYHLLHN HLF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1375382ERRRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010068596.10.0PREDICTED: transcription factor ABORTED MICROSPORES
TrEMBLA0A059BEM00.0A0A059BEM0_EUCGR; Uncharacterized protein
STRINGPOPTR_0009s13860.11e-163(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75892741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-134bHLH family protein